trace_merge

Reliability status: stable

This just takes a list of trace files and merges them together.

Usage example:

ls trace*.ecsv | trace_merge

or

trace_merge --traces <folder_path_with_trace_files>

outputs

ChromatinTraceTable() object and output .ecsv formatted file with assembled trace tables.

usage: trace_merge [-h] [-T TRACES] [--pipe] [-N NAME] [-F FOLDER] [--verbose]

Named Arguments

-T, --traces

Input folder with traces to merge

--pipe

input trace file list from stdin (pipe)

Default: True

-N, --name

Output file name

Default: 'merged_traces.ecsv'

-F, --folder

Output folder (default: Current Working Directory)

--verbose

Enable verbose output

Default: False

Output Files

The script generates:

  1. merged_traces.ecsv: Merged trace table containing the input trace tables. This is the default filename when no output filename is provided.

Examples

trace_merge --help

Notes

  • See the command-line reference above for the complete option list.