trace_to_matrix

Reliability status: development

uses the core routines of pyHiM to convert a trace file to a matrix in a standalone script

usage: trace_to_matrix [-h] [-F OUTPUTFOLDER] [--input INPUT]
                       [--distance_threshold DISTANCE_THRESHOLD] [--pipe]

Named Arguments

-F, --outputFolder

Output folder, Default: PWD

--input

Name of input trace file.

--distance_threshold

Threshold for the maximum distance allowed. Default: np.inf

--pipe

inputs Trace file list from stdin (pipe)

Default: False