plot_matrix_comparison

Reliability status: development

Compare PWD matrices from two experiments - pearson correlation in ensemble * *- also now plots violin diagrams with the distribution of proximities/distances for each dataset - make sure to map barcodes to allow for experiments with different barcode combinations [TODO] - same but single cell [TODO]

usage: plot_matrix_comparison [-h] [--input1 INPUT1] [--input2 INPUT2]
                              [--output OUTPUT]
                              [--output_format {png,svg,pdf}] [--mode MODE]
                              [--x_min X_MIN] [--x_max X_MAX]
                              [--max_distance MAX_DISTANCE] [--scale SCALE]

Named Arguments

--input1

Name of first input trace file.

--input2

Name of second input trace file.

--output

Name of output plot. Default: scatter_plot.png

--output_format

Possible choices: png, svg, pdf

Output image format. Default = png.

Default: 'png'

--mode

Mode used to calculate the mean distance. Can be either ‘median’, ‘KDE’ or ‘proximity’. Default: median

--x_min

X minimum for a localization. Default = 0

--x_max

X maximum for a localization. Default = np.inf

--max_distance

Upper distance threshold in micro-meters. Default = np.inf

--scale

Scale: log or linear. Default: linear