traceratops documentation
=========================

**Date**: |today| **Version**: |release|

.. toctree::
   :caption: Getting Started

   quickstart/installation

.. toctree::
   :maxdepth: 1
   :caption: Scripts

   scripts/trace_filter
   scripts/trace_merge
   scripts/figure_him_matrix
   scripts/trace_to_matrix
   scripts/trace_stats
   scripts/trace_splitter
   scripts/trace_plot
   scripts/trace_pearsons
   scripts/trace_impute_genomic_coordinates
   scripts/trace_import_from_fofct
   scripts/trace_export_to_fofct
   scripts/trace_filter_advanced
   scripts/trace_correct_coordinates
   scripts/trace_combinator
   scripts/trace_assign_mask
   scripts/trace_analyzer
   scripts/pwd_matrix_2_pdb
   scripts/process_him_matrix
   scripts/localization_merge
   scripts/localization_cp_files
   scripts/compare_pwd_matrices
   scripts/analyze_localizations
   scripts/replot_3way
   scripts/plot_bootstrapping
   scripts/plot_4m
   scripts/plot_3way
   scripts/plot_single_cell
   scripts/plot_n_him_matrices
   scripts/plot_compare2matrices


.. toctree::
   :maxdepth: 1
   :caption: Contribute

   contribute/CONTRIBUTING
   Installation [DEV]<contribute/dev_installation>
   contribute/how_to_document
   contribute/pr_checklists