trace_filter_advanced

Reliability status: development

Advanced script based on trace_filter.

usage: trace_filter_advanced [-h] [-F ROOTFOLDER] [-O OUTPUT] [--input INPUT]
                             [--overlapping_threshold OVERLAPPING_THRESHOLD]
                             [--N_barcodes N_BARCODES] [--pipe]

Named Arguments

-F, --rootFolder

Folder with images

-O, --output

Tag to add to the output file. Default = filtered

--input

Name of input trace file.

--overlapping_threshold

overlapping threshold. Default = 0.030

--N_barcodes

minimum_number_barcodes. Default = 2

--pipe

inputs Trace file list from stdin (pipe)

Default: False