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Getting Started

  • Installation
  • Changelog

Tutorials

  • Getting started with notebooks
  • Using the --pipe argument
  • Merge Multi-ROI
  • Quality Control
  • Filter Thresholds
  • Filter Duplicates
  • Split Traces
  • Assign Masks & Split Labels
  • Matrix Visualization
  • Multiway Co-localization
  • Compare Datasets
  • Physical vs genomic Distance

Scripts

  • Data formats
  • Localization
  • Trace
  • Matrix
  • Plot

Contribute

  • Contributing guide
  • Installation [DEV]
  • Documentation
  • PR checklists
  • Release guide
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© Copyright 2025, Marcelo Nollmann, Xavier Devos.

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