trace_stats

Reliability status: development

This script reads a chromatin trace file and computes basic statistics:

• Number of unique ROIs

• Number of unique chromatin traces

usage: trace_stats [-h] (--input INPUT | --pipe)

Named Arguments

--input

Path to the input trace file.

--pipe

Read trace filenames from stdin (pipe).

Default: False

Example

trace_stats.py --input traces_KC_AB_merged.ecsv

Terminal output:

$ Importing table from pyHiM format
Successfully loaded trace table: traces_KC_AB_merged.ecsv
Statistics for traces_KC_AB_merged.ecsv:
- Number of unique ROIs: 26
- Number of unique chromatin traces: 7573