trace_stats

Reliability status: development

This script reads a chromatin trace file and computes basic statistics:

Number of unique ROIs
Number of unique chromatin traces

usage: trace_stats [-h] --input INPUT

Named Arguments

--input: Path to the input trace file.

Example

trace_stats.py --input traces_KC_AB_merged.ecsv

Terminal output:

$ Importing table from pyHiM format
Successfully loaded trace table: traces_KC_AB_merged.ecsv
Statistics for traces_KC_AB_merged.ecsv:
- Number of unique ROIs: 26
- Number of unique chromatin traces: 7573